A collection of helper functions inspired by and largely building on Christoph Heibl's phyloch package (http://www.christophheibl.de/Rpackages.html).
These R scripts are in the process of being rewritten for packaging with roxygen. For now, they should work but you might need to change some hard-coded function imports and paths to external programs.
The R source code is in
R/ and can be built with
Pre-compiled packages for Win, Mac, and Unices are also available in
Examples and a vignette are forthcoming....
Tested in GNU/Linux. Should also work in OS X and probably in Windows. But note that dependencies are not currently well documented.
PS. Two shell scripts (
rm_node_annotations.py) are also
bin/). These can be copied or symlinked into, e.g.,
$HOME/bin/ for convenient use. You may need to
chmod +x them,
and the first one probably won't work on Windows as written.