~cypheon/pkgsrc-wip

pkgsrc-wip/nanomath/DESCR -rw-r--r-- 731 bytes
5f1bf4f5 — Johann Rudloff Subst PLIST paths for platform specific files for other architectures 6 months ago
                                                                                
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This module provides a few simple math and statistics functions for
other scripts processing Oxford Nanopore sequencing data

## Functions

* Calculate read N50 from a set of lengths `get_N50(readlenghts)`

* Remove extreme length outliers from a dataset
  `remove_length_outliers(dataframe, columname)`

* Calculate the average Phred quality of a read `ave_qual(qualscores)`

* Write out the statistics report after calling readstats function
  `write_stats(dataframe, outputname)`

* Compute a number of statistics, return a dictionary
  `calc_read_stats(dataframe)`

If you use this tool, please consider citing our publication:
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939.